1. RNA binding site prediction results (1q8nA.pdb)
In the network, each node represents an individual nucleotide. The edges between nodes that are less than 8 Å apart indicate non-covalent interactions. The size of each node corresponds to its degree value, which is specific to the associated nucleotide. The red nodes within the network are predicted binding sites. You can find the name, degree (DG), neighborhood connectivity (NC), betweenness centrality (BC), closeness centrality (CL), and eccentricity (EC) values for these binding sites in the table on the right. When you hover your mouse over a node, you will be able to see the nucleotide name, nucleotide number, degree (DG), neighborhood connectivity (NC), betweenness centrality (BC), closeness centrality (CL), and eccentricity (EC) values. Moreover, you can zoom in and out of the network by scrolling your mouse and dragging the network for more detailed information.
The results are divided into three modules: nodes, edges, and sites.
1. The "nodes" module contains the names of the nucleotides in the network, along with their degree (DG), neighborhood connectivity (NC),
betweenness centrality (BC), closeness centrality (CL), and eccentricity (EC) values.
2. The "edges" module provides information about the connected nodes.
3. The "sites" module consists of predicted binding sites and their respective nucleotide names, degree (DG), neighborhood connectivity (NC),
betweenness centrality (BC), closeness centrality (CL), and eccentricity (EC) values.
3. The results of RNetdyn in TAR/Tat/P-TEFb complex
The comparison of DDNC and DCC in TAR/CyclinT1 interface.
Download Results.