Download

RNA Data Packages

# Group File Contents Download
1 All RNA RNA classification and description table These table files contain the classification information and description of RNA Download
2 RNA pocket MRC file These files contain the RNA pocket structure info. in MRC format which can be visualized in Cimera. Download
3 RNA pocket NetCDF file These files contain the RNA pocket structure info. in NetCDF format which is readable in Python. Download
4 RMSD The RMSD table with 0.80 identity cut-off These table files contain RMSD info. between presentative RNA and other RNA of the same cluster with 0.80 identity cut-off Download
5 The RMSD table with 0.95 identity cut-off These table files contain RMSD info. between presentative RNA and other RNA of the same cluster with 0.95 identity cut-off Download

RNA Pocket and Ligand Interaction Data Packages

# PDB_ID Ligand name Pocket_ID File and contents Download
1 1AJF NCO 1AJF_1 Interaction and pocket information table Download
2 RNA-ligand interaction information files Download
3 Pocket MRC files Download
4 1AM0 AMP N/A Interaction and pocket information table Download
5 RNA-ligand interaction information files Download
6 Pocket MRC files Download
7 1BYJ GE1, GE2, GE3 1BYJ_1 Interaction and pocket information table Download
8 RNA-ligand interaction information files Download
9 Pocket MRC files Download
10 1C0O NCO N/A Interaction and pocket information table Download
11 RNA-ligand interaction information files Download
12 Pocket MRC files Download
13 1DUH SO4 1DUH_1, 1DUH_2, 1DUH_3 Interaction and pocket information table Download
14 RNA-ligand interaction information files Download
15 Pocket MRC files Download
16 1EHT TEP N/A Interaction and pocket information table Download
17 RNA-ligand interaction information files Download
18 Pocket MRC files Download
19 1EI2 NMY N/A Interaction and pocket information table Download
20 RNA-ligand interaction information files Download
21 Pocket MRC files Download
22 1EVV SPM 1EVV_1, 1EVV_2, 1EVV_3, 1EVV_4, 1EVV_5 Interaction and pocket information table Download
23 RNA-ligand interaction information files Download
24 Pocket MRC files Download
25 1F78 NCO 1F78_1, 1F78_2 Interaction and pocket information table Download
26 RNA-ligand interaction information files Download
27 Pocket MRC files Download
28 1FMN FMN 1FMN_1 Interaction and pocket information table Download
29 RNA-ligand interaction information files Download
30 Pocket MRC files Download
31 1LVJ PMZ 1LVJ_1 Interaction and pocket information table Download
32 RNA-ligand interaction information files Download
33 Pocket MRC files Download
34 1NBK GND 1NBK_1, 1NBK_2 Interaction and pocket information table Download
35 RNA-ligand interaction information files Download
36 Pocket MRC files Download
37 1NEM BDG, NEB 1NEM_1 Interaction and pocket information table Download
38 RNA-ligand interaction information files Download
39 Pocket MRC files Download
40 1Q8N MGR 1Q8N_1 Interaction and pocket information table Download
41 RNA-ligand interaction information files Download
42 Pocket MRC files Download
43 1RAW AMP N/A Interaction and pocket information table Download
44 RNA-ligand interaction information files Download
45 Pocket MRC files Download
46 1TOB TOA, TOB, TOC N/A Interaction and pocket information table Download
47 RNA-ligand interaction information files Download
48 Pocket MRC files Download
49 1XSU NCO 1XSU_1 Interaction and pocket information table Download
50 RNA-ligand interaction information files Download
51 Pocket MRC files Download
52 1Y26 ADE 1Y26_1, 1Y26_2, 1Y26_3 Interaction and pocket information table Download
53 RNA-ligand interaction information files Download
54 Pocket MRC files Download
55 1Y27 GUN 1Y27_1, 1Y27_2, 1Y27_3 Interaction and pocket information table Download
56 RNA-ligand interaction information files Download
57 Pocket MRC files Download
58 2AU4 GTP 2AU4_1, 2AU4_2 Interaction and pocket information table Download
59 RNA-ligand interaction information files Download
60 Pocket MRC files Download
61 2HOJ TPP 2HOJ_1, 2HOJ_2 Interaction and pocket information table Download
62 RNA-ligand interaction information files Download
63 Pocket MRC files Download
64 2KTZ ISH 2KTZ_1, 2KTZ_2 Interaction and pocket information table Download
65 RNA-ligand interaction information files Download
66 Pocket MRC files Download
67 2KX8 ARG 2KX8_1, 2KX8_2 Interaction and pocket information table Download
68 RNA-ligand interaction information files Download
69 Pocket MRC files Download
70 2KXM RIO N/A Interaction and pocket information table Download
71 RNA-ligand interaction information files Download
72 Pocket MRC files Download
73 2L1V PRF 2L1V_1 Interaction and pocket information table Download
74 RNA-ligand interaction information files Download
75 Pocket MRC files Download
76 2L94 L94 2L94_1, 2L94_2 Interaction and pocket information table Download
77 RNA-ligand interaction information files Download
78 Pocket MRC files Download
79 2LWK 0EC 2LWK_1 Interaction and pocket information table Download
80 RNA-ligand interaction information files Download
81 Pocket MRC files Download
82 2MIY PRF 2MIY_1, 2MIY_2, 2MIY_3 Interaction and pocket information table Download
83 RNA-ligand interaction information files Download
84 Pocket MRC files Download
85 2TOB 2TB, TOA, TOC N/A Interaction and pocket information table Download
86 RNA-ligand interaction information files Download
87 Pocket MRC files Download
88 2TRA SPM 2TRA_1, 2TRA_2, 2TRA_3 Interaction and pocket information table Download
89 RNA-ligand interaction information files Download
90 Pocket MRC files Download
91 2YGH SAM 2YGH_1, 2YGH_2, 2YGH_3, 2YGH_4, 2YGH_5 Interaction and pocket information table Download
92 RNA-ligand interaction information files Download
93 Pocket MRC files Download
94 3BNT NCO 3BNT_1, 3BNT_2 Interaction and pocket information table Download
95 RNA-ligand interaction information files Download
96 Pocket MRC files Download
97 3CZW SO4 3CZW_1 Interaction and pocket information table Download
98 RNA-ligand interaction information files Download
99 Pocket MRC files Download
100 3D0U IRI, LYS 3D0U_1, 3D0U_2, 3D0U_3, 3D0U_4, 3D0U_5, 3D0U_6 Interaction and pocket information table Download
101 RNA-ligand interaction information files Download
102 Pocket MRC files Download
103 3DIG IPA, SLZ 3DIG_1, 3DIG_2, 3DIG_3, 3DIG_4, 3DIG_5 Interaction and pocket information table Download
104 RNA-ligand interaction information files Download
105 Pocket MRC files Download
106 3DVZ GOL 3DVZ_1, 3DVZ_2 Interaction and pocket information table Download
107 RNA-ligand interaction information files Download
108 Pocket MRC files Download
109 3E5C SAM 3E5C_1, 3E5C_2, 3E5C_3 Interaction and pocket information table Download
110 RNA-ligand interaction information files Download
111 Pocket MRC files Download
112 3F2Q FMN 3F2Q_1, 3F2Q_2, 3F2Q_3 Interaction and pocket information table Download
113 RNA-ligand interaction information files Download
114 Pocket MRC files Download
115 3FO4 6GU, ACT, NCO 3FO4_1, 3FO4_2, 3FO4_3 Interaction and pocket information table Download
116 RNA-ligand interaction information files Download
117 Pocket MRC files Download
118 3GCA PQ0, SO4 3GCA_1 Interaction and pocket information table Download
119 RNA-ligand interaction information files Download
120 Pocket MRC files Download
121 3GX7 SAM 3GX7_1, 3GX7_2, 3GX7_3 Interaction and pocket information table Download
122 RNA-ligand interaction information files Download
123 Pocket MRC files Download
124 3K1V PRF 3K1V_1 Interaction and pocket information table Download
125 RNA-ligand interaction information files Download
126 Pocket MRC files Download
127 3LA5 5AZ 3LA5_1, 3LA5_2, 3LA5_3 Interaction and pocket information table Download
128 RNA-ligand interaction information files Download
129 Pocket MRC files Download
130 3MIJ R14 N/A Interaction and pocket information table Download
131 RNA-ligand interaction information files Download
132 Pocket MRC files Download
133 3NPN SAH 3NPN_1, 3NPN_2, 3NPN_3 Interaction and pocket information table Download
134 RNA-ligand interaction information files Download
135 Pocket MRC files Download
136 3SD3 FOZ, IRI 3SD3_1, 3SD3_2, 3SD3_3 Interaction and pocket information table Download
137 RNA-ligand interaction information files Download
138 Pocket MRC files Download
139 3SUH FFO 3SUH_1, 3SUH_2, 3SUH_3 Interaction and pocket information table Download
140 RNA-ligand interaction information files Download
141 Pocket MRC files Download
142 4AOB SAM 4AOB_1, 4AOB_2, 4AOB_3, 4AOB_4, 4AOB_5 Interaction and pocket information table Download
143 RNA-ligand interaction information files Download
144 Pocket MRC files Download
145 4B5R SAM 4B5R_1, 4B5R_2, 4B5R_3, 4B5R_4, 4B5R_5, 4B5R_6, 4B5R_7 Interaction and pocket information table Download
146 RNA-ligand interaction information files Download
147 Pocket MRC files Download
148 4ENB IRI 4ENB_1, 4ENB_2, 4ENB_3 Interaction and pocket information table Download
149 RNA-ligand interaction information files Download
150 Pocket MRC files Download
151 4FAU EPE, SPM 4FAU_1, 4FAU_2, 4FAU_3, 4FAU_4, 4FAU_5, 4FAU_6, 4FAU_7, 4FAU_8, 4FAU_9 Interaction and pocket information table Download
152 RNA-ligand interaction information files Download
153 Pocket MRC files Download
154 4FEN ACT, HPA, NCO 4FEN_1, 4FEN_2, 4FEN_3 Interaction and pocket information table Download
155 RNA-ligand interaction information files Download
156 Pocket MRC files Download
157 4GMA B1Z 4GMA_1, 4GMA_2, 4GMA_3, 4GMA_4, 4GMA_5, 4GMA_6, 4GMA_7 Interaction and pocket information table Download
158 RNA-ligand interaction information files Download
159 Pocket MRC files Download
160 4GXY B1Z, IRI 4GXY_1, 4GXY_2, 4GXY_3, 4GXY_4, 4GXY_5, 4GXY_6, 4GXY_7 Interaction and pocket information table Download
161 RNA-ligand interaction information files Download
162 Pocket MRC files Download
163 4JF2 PRF 4JF2_1, 4JF2_2, 4JF2_3, 4JF2_4, 4JF2_5 Interaction and pocket information table Download
164 RNA-ligand interaction information files Download
165 Pocket MRC files Download
166 4KQY SAM 4KQY_1, 4KQY_2, 4KQY_3 Interaction and pocket information table Download
167 RNA-ligand interaction information files Download
168 Pocket MRC files Download
169 4OQU SAM 4OQU_1, 4OQU_2, 4OQU_3, 4OQU_4, 4OQU_5, 4OQU_6 Interaction and pocket information table Download
170 RNA-ligand interaction information files Download
171 Pocket MRC files Download
172 4P5J IRI, SPM 4P5J_1, 4P5J_2, 4P5J_3 Interaction and pocket information table Download
173 RNA-ligand interaction information files Download
174 Pocket MRC files Download
175 4P95 MES 4P95_1, 4P95_2, 4P95_3, 4P95_4, 4P95_5, 4P95_6 Interaction and pocket information table Download
176 RNA-ligand interaction information files Download
177 Pocket MRC files Download
178 4QK9 2BA 4QK9_1, 4QK9_2, 4QK9_3, 4QK9_4, 4QK9_5, 4QK9_6, 4QK9_7 Interaction and pocket information table Download
179 RNA-ligand interaction information files Download
180 Pocket MRC files Download
181 4QLM 2BA, SO4 4QLM_1, 4QLM_2, 4QLM_3, 4QLM_4, 4QLM_5 Interaction and pocket information table Download
182 RNA-ligand interaction information files Download
183 Pocket MRC files Download
184 4RUM GOL 4RUM_1, 4RUM_2, 4RUM_3, 4RUM_4, 4RUM_5 Interaction and pocket information table Download
185 RNA-ligand interaction information files Download
186 Pocket MRC files Download
187 4RZD PRF 4RZD_1, 4RZD_2, 4RZD_3 Interaction and pocket information table Download
188 RNA-ligand interaction information files Download
189 Pocket MRC files Download
190 4WFL NCO 4WFL_1, 4WFL_2, 4WFL_3 Interaction and pocket information table Download
191 RNA-ligand interaction information files Download
192 Pocket MRC files Download
193 4XW7 AMZ, IRI 4XW7_1, 4XW7_2 Interaction and pocket information table Download
194 RNA-ligand interaction information files Download
195 Pocket MRC files Download
196 5HBY PZG N/A Interaction and pocket information table Download
197 RNA-ligand interaction information files Download
198 Pocket MRC files Download
199 5KPY 4PQ, IRI 5KPY_1, 5KPY_2 Interaction and pocket information table Download
200 RNA-ligand interaction information files Download
201 Pocket MRC files Download
202 5LWJ GTP 5LWJ_1 Interaction and pocket information table Download
203 RNA-ligand interaction information files Download
204 Pocket MRC files Download
205 5M0H SO4 5M0H_1, 5M0H_2 Interaction and pocket information table Download
206 RNA-ligand interaction information files Download
207 Pocket MRC files Download
208 5MWI SO4 5MWI_1, 5MWI_2 Interaction and pocket information table Download
209 RNA-ligand interaction information files Download
210 Pocket MRC files Download
211 5NZ6 GAI 5NZ6_1 Interaction and pocket information table Download
212 RNA-ligand interaction information files Download
213 Pocket MRC files Download
214 5OB3 1TU, SPM 5OB3_1, 5OB3_2 Interaction and pocket information table Download
215 RNA-ligand interaction information files Download
216 Pocket MRC files Download
217 5SWE ADE 5SWE_1, 5SWE_2, 5SWE_3 Interaction and pocket information table Download
218 RNA-ligand interaction information files Download
219 Pocket MRC files Download
220 5T83 GAI, IRI, SPK 5T83_1, 5T83_2, 5T83_3 Interaction and pocket information table Download
221 RNA-ligand interaction information files Download
222 Pocket MRC files Download
223 5TPY HEZ 5TPY_1, 5TPY_2, 5TPY_3 Interaction and pocket information table Download
224 RNA-ligand interaction information files Download
225 Pocket MRC files Download
226 5U3G GAI 5U3G_1, 5U3G_2 Interaction and pocket information table Download
227 RNA-ligand interaction information files Download
228 Pocket MRC files Download
229 5Z1I FSJ 5Z1I_1 Interaction and pocket information table Download
230 RNA-ligand interaction information files Download
231 Pocket MRC files Download
232 6CU1 SO4 6CU1_1, 6CU1_2, 6CU1_3, 6CU1_4, 6CU1_5 Interaction and pocket information table Download
233 RNA-ligand interaction information files Download
234 Pocket MRC files Download
235 6D3P IRI 6D3P_1, 6D3P_2, 6D3P_3 Interaction and pocket information table Download
236 RNA-ligand interaction information files Download
237 Pocket MRC files Download
238 6DLQ PRP 6DLQ_1, 6DLQ_2, 6DLQ_3 Interaction and pocket information table Download
239 RNA-ligand interaction information files Download
240 Pocket MRC files Download
241 6DME G4P 6DME_1, 6DME_2, 6DME_3 Interaction and pocket information table Download
242 RNA-ligand interaction information files Download
243 Pocket MRC files Download
244 6E1S HLV 6E1S_1 Interaction and pocket information table Download
245 RNA-ligand interaction information files Download
246 Pocket MRC files Download
247 6E80 ACT, IRI 6E80_1 Interaction and pocket information table Download
248 RNA-ligand interaction information files Download
249 Pocket MRC files Download
250 6E8U HZD 6E8U_1 Interaction and pocket information table Download
251 RNA-ligand interaction information files Download
252 Pocket MRC files Download
253 6GZK FH8 6GZK_1, 6GZK_2 Interaction and pocket information table Download
254 RNA-ligand interaction information files Download
255 Pocket MRC files Download
256 6HAG SAH N/A Interaction and pocket information table Download
257 RNA-ligand interaction information files Download
258 Pocket MRC files Download
259 6HBT FXQ, SO4 6HBT_1 Interaction and pocket information table Download
260 RNA-ligand interaction information files Download
261 Pocket MRC files Download
262 6IZP B2R 6IZP_1, 6IZP_2 Interaction and pocket information table Download
263 RNA-ligand interaction information files Download
264 Pocket MRC files Download
265 6JJH POH N/A Interaction and pocket information table Download
266 RNA-ligand interaction information files Download
267 Pocket MRC files Download
268 6JQ6 IRI 6JQ6_1, 6JQ6_2, 6JQ6_3 Interaction and pocket information table Download
269 RNA-ligand interaction information files Download
270 Pocket MRC files Download
271 6N5Q 2BA, SO4 6N5Q_1, 6N5Q_2, 6N5Q_3, 6N5Q_4, 6N5Q_5 Interaction and pocket information table Download
272 RNA-ligand interaction information files Download
273 Pocket MRC files Download
274 6P2H GNG, NCO 6P2H_1, 6P2H_2 Interaction and pocket information table Download
275 RNA-ligand interaction information files Download
276 Pocket MRC files Download
277 6UET SAM 6UET_1, 6UET_2, 6UET_3, 6UET_4, 6UET_5, 6UET_6 Interaction and pocket information table Download
278 RNA-ligand interaction information files Download
279 Pocket MRC files Download
280 6UGI SO4 6UGI_1 Interaction and pocket information table Download
281 RNA-ligand interaction information files Download
282 Pocket MRC files Download

Statistical information data Packages

# File Contents Download
1 RNA-ligand complexes general information table The table contains the general information of RNA (including PUBMED, Method, Resolution, Organism, Type, Nts, Ligand) Download
2 RNA pocket information table The table contains the topology information of all the pockets (including Volume, Area, Sphericity, Effective radius, Centroid, rpd1, rpd2, shape similarity score, shape and the secondary structural elements the pocket located) Download
3 RNA-ligand interaction information table The table contains the sequence binding sites of RNA and ligand, and the functional group of ligand involved in interaction. Download
RNA-ligand interaction information ZIP file The ZIP file cotains detail interaction information. Download
4 Nime predicted structure The ZIP format file contains nine predicted structures involved used in structure modeling section. Download
5 RPDescriptor program The ZIP format file contains RPDescriptor program and guidance. Download