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RNA Pocket Clusters in RNA-protein Pocket Database


Number of RNA chains:     Number of protein chains:     RNA calss:     Presentative entry PDB_ID:    


Table. The description of RNAs



RNA class Function description Presentative RNA PDB_ID
rRNA The component of ribosome, which is usually combined with ribosome protein to form ribosome. 1DK1,1MZP,1RKJ,2HGH,3U4M,5D6G,6AJK;3R9X;2X7N
riboswitch Binding to small molecule metabolites and iron ions ; regulating transcription, translation, shearing and RNA stability. 3MXH,7D7V
ribozyme RNA with catalytic activity. 4PR6;2R8S
snRNA Combining with protein factors to form small ribosomal protein particles and perform the function of cutting mRNA. 1T4L
mRNA Carrying genetic information transcribed from DNA; template for protein synthesis 2HW8,2L2K,2L3J,2L3C;1L1C
tRNA As a carrier of amino acids, it is responsible for protein transcription in protein synthesis 1B23,1H3E,1K8W,1OB2,2DR2,2DRB,2MQV,2ZZM,3TUP,5WT3;1H4Q,3QSY;3V11;5X6B
aptamer Combined with specific target molecules. 3EGZ,4M4O,4PDB;3DD2,4KZD;6CF2
dsRNA A common way of gene selective expression, which can inhibit the rapid division of cancer cells in vivo. 1EKZ,2LBS,6SDY;2NUE;4OOG
microRNA Complementing with mRNA to silence or degrade mRNA 1L9A,1LNG,2N82
other Other types 1A1T,1FJE,1NYB,1U6P,2AB4,2ESE,2FY1,2IHX,2N3O,2PJP,2XDB,2Y8W,4AL5,4BW0,6CMN, 6GBM,6TPH,6XH1,7K9D;4PMI,4UE4,6D12,6U8D;1ZSE;4C7O,6CYT;2MF1